scREAD Data ID: AD00201
Species: Human
Region: Entorhinal Cortex
Condition: Control
Braak stage: NA; 0
Gender: Male
Age: mean age 77.6, range 67.3-91 years; 50-91 years
Number of cells from source: 29993
Number of cells in scREAD after filtering: 29993
Number of identified cell types: 6
Title: A Single-Cell Atlas of Entorhinal Cortex From Individuals With Alzheimer's Disease Reveals Cell-Type-Specific Gene Expression Regulation
Methodology: Single-nucleus RNA-seq
Protocol: DroNc-seq
GEO/synapse number: GSE138852
Pubmed ID: 31768052
Citation: Grubman A, Chew G, Ouyang JF, Sun G et al. A single-cell atlas of entorhinal cortex from individuals with Alzheimer’s disease reveals cell-type-specific gene expression regulation. Nat Neurosci 2019 Dec;22(12):2087-2097.
Title: Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease
Methodology: Single-nucleus RNA-seq
Protocol: 10x Genomics
GEO/synapse number: GSE147528
Pubmed ID: NA
Citation: Leng K, Li E, Eser R, et al. Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease. bioRxiv; 2020. 10.1101/2020.04.04.025825.
Cell type & subcluster:
Gene expression
Point size:
Please enter a gene symbol.
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Log2 fold-change cutoff:
Adjusted p-value cutoff:
| SLC1A2 | 3.098 | 0.834 | 0.106 | 0.00e+0 |
| ADGRV1 | 2.86821 | 0.797 | 0.059 | 0.00e+0 |
| RNF219-AS1 | 2.76788 | 0.704 | 0.024 | 0.00e+0 |
| SLC1A3 | 2.54543 | 0.85 | 0.091 | 0.00e+0 |
| APOE | 2.50028 | 0.722 | 0.069 | 0.00e+0 |
| GPC5 | 2.28437 | 0.816 | 0.163 | 0.00e+0 |
| MT2A | 2.2798 | 0.582 | 0.043 | 0.00e+0 |
| FGFR3 | 2.2429 | 0.605 | 0.029 | 0.00e+0 |
| NKAIN3 | 2.11467 | 0.679 | 0.093 | 0.00e+0 |
| PITPNC1 | 2.10437 | 0.793 | 0.126 | 0.00e+0 |
| DTNA | 2.08441 | 0.827 | 0.171 | 0.00e+0 |
| CST3 | 2.08133 | 0.617 | 0.073 | 0.00e+0 |
| EMX2 | 2.04195 | 0.463 | 0.007 | 0.00e+0 |
| GFAP | 2.04057 | 0.418 | 0.04 | 0.00e+0 |
| GJA1 | 1.99003 | 0.429 | 0.014 | 0.00e+0 |